| RSP 2 Vocabualry 3 (Sequence Alignment) | |||||
| ranking | times | word | ranking | times | word |
| used | used | ||||
| 1 | 71 | sequence | 201 | 1 | evaluate |
| 2 | 67 | alignment | 202 | 1 | evolution |
| 3 | 26 | query | 203 | 1 | exclusively |
| 4 | 22 | protein | 204 | 1 | expand |
| 5 | 21 | method | 205 | 1 | expected |
| 6 | 20 | structural | 206 | 1 | extend |
| 7 | 18 | matrix | 207 | 1 | extensible |
| 8 | 17 | database | 208 | 1 | extensive |
| 9 | 17 | dynamic | 209 | 1 | extrapolate |
| 10 | 17 | global | 210 | 1 | extreme |
| 11 | 17 | programming | 211 | 1 | fold |
| 12 | 17 | similar | 212 | 1 | force |
| 13 | 15 | multiple | 213 | 1 | formula |
| 14 | 14 | pairwise | 214 | 1 | formulations |
| 15 | 12 | regions | 215 | 1 | frameshift |
| 16 | 12 | scoring | 216 | 1 | generate |
| 17 | 11 | blast | 217 | 1 | genewise |
| 18 | 10 | related | 218 | 1 | genomic |
| 19 | 9 | acid | 219 | 1 | geometry |
| 20 | 9 | dot | 220 | 1 | glocal |
| 21 | 9 | matrices | 221 | 1 | graphically |
| 22 | 9 | nucleotide | 222 | 1 | guarantee |
| 23 | 9 | phylogenetic | 223 | 1 | hexapeptides |
| 24 | 8 | conserved | 224 | 1 | hidden |
| 25 | 8 | progressive | 225 | 1 | highest |
| 26 | 7 | common | 226 | 1 | hits |
| 27 | 7 | function | 227 | 1 | homologous |
| 28 | 7 | homology | 228 | 1 | hybrid |
| 29 | 6 | algorithm | 229 | 1 | hydrophobicity |
| 30 | 6 | substitution | 230 | 1 | hypothesized |
| 31 | 6 | tools | 231 | 1 | implicitly |
| 32 | 5 | account | 232 | 1 | inaccuracies |
| 33 | 5 | although | 233 | 1 | includes |
| 34 | 5 | attempt | 234 | 1 | increases |
| 35 | 5 | columns | 235 | 1 | independent |
| 36 | 5 | heuristic | 236 | 1 | indexed |
| 37 | 5 | identify | 237 | 1 | inspired |
| 38 | 5 | initial | 238 | 1 | instead |
| 39 | 5 | motif | 239 | 1 | instructive |
| 40 | 5 | optimal | 240 | 1 | intensity |
| 41 | 4 | combinatorial | 241 | 1 | interpretation |
| 42 | 4 | degree | 242 | 1 | inverse |
| 43 | 4 | efficient | 243 | 1 | inverted |
| 44 | 4 | especially | 244 | 1 | involving |
| 45 | 4 | extension | 245 | 1 | isolated |
| 46 | 4 | match | 246 | 1 | iteration |
| 47 | 4 | penalty | 247 | 1 | judged |
| 48 | 4 | prediction | 248 | 1 | knowledge |
| 49 | 4 | profile | 249 | 1 | leftmost |
| 50 | 4 | relatedness | 250 | 1 | lengthy |
| 51 | 4 | repetitive | 251 | 1 | mechanistic |
| 52 | 4 | residue | 252 | 1 | mismatch |
| 53 | 4 | solution | 253 | 1 | model |
| 54 | 4 | statistical | 254 | 1 | modifying |
| 55 | 4 | structures | 255 | 1 | nevertheless |
| 56 | 4 | technique | 256 | 1 | nonoverlapping |
| 57 | 4 | variety | 257 | 1 | normalize |
| 58 | 3 | accuracy | 258 | 1 | numerous |
| 59 | 3 | ancestor | 259 | 1 | observations |
| 60 | 3 | appear | 260 | 1 | obtain |
| 61 | 3 | computational | 261 | 1 | occasionally |
| 62 | 3 | conservation | 262 | 1 | occupying |
| 63 | 3 | consists | 263 | 1 | occurrences |
| 64 | 3 | detect | 264 | 1 | optimize |
| 65 | 3 | distribution | 265 | 1 | optimum |
| 66 | 3 | diverged | 266 | 1 | organism |
| 67 | 3 | fragment | 267 | 1 | output |
| 68 | 3 | implementation | 268 | 1 | overall |
| 69 | 3 | indicate | 269 | 1 | performance |
| 70 | 3 | iterative | 270 | 1 | period |
| 71 | 3 | likelihood | 271 | 1 | permit |
| 72 | 3 | lineages | 272 | 1 | piecewise |
| 73 | 3 | offset | 273 | 1 | pipe |
| 74 | 3 | reflect | 274 | 1 | placed |
| 75 | 3 | relationships | 275 | 1 | portals |
| 76 | 3 | relative | 276 | 1 | precision |
| 77 | 3 | vary | 277 | 1 | predefined |
| 78 | 3 | via | 278 | 1 | preferable |
| 79 | 2 | apparent | 279 | 1 | preferred |
| 80 | 2 | appropriate | 280 | 1 | presence |
| 81 | 2 | architecture | 281 | 1 | primarily |
| 82 | 2 | arranged | 282 | 1 | probabilistic |
| 83 | 2 | assessment | 283 | 1 | probability |
| 84 | 2 | assign | 284 | 1 | processing |
| 85 | 2 | balibase | 285 | 1 | production |
| 86 | 2 | base | 286 | 1 | prohibitively |
| 87 | 2 | candidate | 287 | 1 | proportion |
| 88 | 2 | coalescence | 288 | 1 | provides |
| 89 | 2 | complicated | 289 | 1 | pseudocounts |
| 90 | 2 | conjunction | 290 | 1 | published |
| 91 | 2 | constant | 291 | 1 | purely |
| 92 | 2 | criteria | 292 | 1 | qualitative |
| 93 | 2 | derived | 293 | 1 | queries |
| 94 | 2 | diagonal | 294 | 1 | ray |
| 95 | 2 | dimensional | 295 | 1 | readseq |
| 96 | 2 | distantly | 296 | 1 | realigned |
| 97 | 2 | divergence | 297 | 1 | recurrence |
| 98 | 2 | empirical | 298 | 1 | reduces |
| 99 | 2 | entire | 299 | 1 | reference |
| 100 | 2 | essentially | 300 | 1 | referred |
| 101 | 2 | explicitly | 301 | 1 | regarding |
| 102 | 2 | framesearch | 302 | 1 | relevance |
| 103 | 2 | frequency | 303 | 1 | reliable |
| 104 | 2 | hierarchical | 304 | 1 | repetitions |
| 105 | 2 | hypothesis | 305 | 1 | repetitiveness |
| 106 | 2 | identical | 306 | 1 | represent |
| 107 | 2 | incorporate | 307 | 1 | restrict |
| 108 | 2 | indels | 308 | 1 | result |
| 109 | 2 | input | 309 | 1 | retrieval |
| 110 | 2 | insertion | 310 | 1 | retrieved |
| 111 | 2 | overlap | 311 | 1 | rigid |
| 112 | 2 | package | 312 | 1 | robust |
| 113 | 2 | plots | 313 | 1 | role |
| 114 | 2 | significance | 314 | 1 | root |
| 115 | 2 | subsets | 315 | 1 | rough |
| 116 | 2 | weighting | 316 | 1 | sacrificing |
| 117 | 1 | accelrys | 317 | 1 | scanned |
| 118 | 1 | accepted | 318 | 1 | scheme |
| 119 | 1 | accommodate | 319 | 1 | searched |
| 120 | 1 | according | 320 | 1 | selection |
| 121 | 1 | active | 321 | 1 | semiconservative |
| 122 | 1 | added | 322 | 1 | semiglobal |
| 123 | 1 | ancient | 323 | 1 | sense |
| 124 | 1 | annealing | 324 | 1 | sequential |
| 125 | 1 | applicable | 325 | 1 | server |
| 126 | 1 | application | 326 | 1 | simulated |
| 127 | 1 | apply | 327 | 1 | solely |
| 128 | 1 | appreciable | 328 | 1 | sort |
| 129 | 1 | approach | 329 | 1 | sources |
| 130 | 1 | approximation | 330 | 1 | span |
| 131 | 1 | arbitrary | 331 | 1 | spectroscopy |
| 132 | 1 | arising | 332 | 1 | stacking |
| 133 | 1 | article | 333 | 1 | standardized |
| 134 | 1 | artifacts | 334 | 1 | stored |
| 135 | 1 | assemble | 335 | 1 | strengths |
| 136 | 1 | assess | 336 | 1 | stumbling |
| 137 | 1 | assumed | 337 | 1 | subsequences |
| 138 | 1 | asterisk | 338 | 1 | subtracted |
| 139 | 1 | authored | 339 | 1 | successively |
| 140 | 1 | avoid | 340 | 1 | sufficiently |
| 141 | 1 | benchmark | 341 | 1 | suggest |
| 142 | 1 | calculates | 342 | 1 | suitable |
| 143 | 1 | capabilities | 343 | 1 | suites |
| 144 | 1 | catalytic | 344 | 1 | surrounding |
| 145 | 1 | categories | 345 | 1 | suspected |
| 146 | 1 | characterize | 346 | 1 | symbol |
| 147 | 1 | choices | 347 | 1 | tabulated |
| 148 | 1 | circumstances | 348 | 1 | template |
| 149 | 1 | class | 349 | 1 | tertiary |
| 150 | 1 | classify | 350 | 1 | theoretical |
| 151 | 1 | clustal | 351 | 1 | topology |
| 152 | 1 | codon | 352 | 1 | traced |
| 153 | 1 | colon | 353 | 1 | translated |
| 154 | 1 | commercial | 354 | 1 | tuple |
| 155 | 1 | comparatively | 355 | 1 | type |
| 156 | 1 | compatibility | 356 | 1 | upstream |
| 157 | 1 | composition | 357 | 1 | usage |
| 158 | 1 | consensus | 358 | 1 | utility |
| 159 | 1 | consequence | 359 | 1 | value |
| 160 | 1 | conservativeness | 360 | 1 | variable |
| 161 | 1 | consuming | 361 | 1 | variant |
| 162 | 1 | context | 362 | 1 | vectors |
| 163 | 1 | contrast | 363 | 1 | visualization |
| 164 | 1 | convergent | |||
| 165 | 1 | conversion | |||
| 166 | 1 | corresponding | |||
| 167 | 1 | crystallography | |||
| 168 | 1 | cutoff | |||
| 169 | 1 | dataset | |||
| 170 | 1 | default | |||
| 171 | 1 | defined | |||
| 172 | 1 | demands | |||
| 173 | 1 | depend | |||
| 174 | 1 | descended | |||
| 175 | 1 | describing | |||
| 176 | 1 | determine | |||
| 177 | 1 | development | |||
| 178 | 1 | differing | |||
| 179 | 1 | directly | |||
| 180 | 1 | discounts | |||
| 181 | 1 | display | |||
| 182 | 1 | dissimilar | |||
| 183 | 1 | distances | |||
| 184 | 1 | distinct | |||
| 185 | 1 | distort | |||
| 186 | 1 | document | |||
| 187 | 1 | domains | |||
| 188 | 1 | downstream | |||
| 189 | 1 | elapsed | |||
| 190 | 1 | elements | |||
| 191 | 1 | eliminated | |||
| 192 | 1 | emboss | |||
| 193 | 1 | encode | |||
| 194 | 1 | encountered | |||
| 195 | 1 | entirely | |||
| 196 | 1 | environmental | |||
| 197 | 1 | enzymes | |||
| 198 | 1 | equal | |||
| 199 | 1 | equates | |||
| 200 | 1 | equivalent | |||